| Gene Symbol | Condition | Atlas Coordinates* | Download JPEG | View |
| Cresyl Violet | Control | Interaural plane +30 mm | Download | |
| Cresyl Violet | Ischemia | Interaural plane +15 mm | Download | |
| ABCD3 | Control | Interaural plane +12 mm | Download | |
| ABCD3 | Ischemia | Interaural plane +11 mm | Download | |
| ABTB2 | Control | Interaural plane +12 mm | Download | |
| ABTB2 | Ischemia | Interaural plane +11 mm | Download | |
| ACOT6 | Control | Interaural plane +12 mm | Download | |
| ACOT6 | Ischemia | Interaural plane +11 mm | Download | |
| ADRA1A | Control | Interaural plane +32 mm | Download | |
| ADRA1A | Ischemia | Interaural plane +15mm | Download | |
| ALPL | Control | Interaural plane +12 mm | Download | |
| ALPL | Ischemia | Interaural plane +20 mm | Download | |
| ANGPT1 | Control | Interaural plane +30 mm | Download | |
| ANGPT1 | Ischemia | Interaural plane +15 mm | Download | |
| APLNR | Control | Interaural plane +27 mm | Download | |
| APLNR | Ischemia | Interaural plane +27 mm | Download | |
| ASCL1 | Control | Interaural plane +30 mm | Download | |
| ASCL1 | Ischemia | Interaural plane +15 mm | Download | |
| ATF7 | Control | Interaural plane +30 mm | Download | |
| ATF7 | Ischemia | Interaural plane +15 mm | Download | |
| AXIN1 | Control | Interaural plane +12 mm | Download | |
| AXIN1 | Ischemia | Interaural plane +11 mm | Download | |
| BBX | Control | Interaural plane +12 mm | Download | |
| BBX | Ischemia | Interaural plane +11 mm | Download | |
| BCAN | Control | Interaural plane +30 mm | Download | |
| BCAN | Ischemia | Interaural plane +15 mm | Download | |
| BMPR1A | Control | Interaural plane +12 mm | Download | |
| BMPR1A | Ischemia | Interaural plane +11 mm | Download | |
| C2 | Control | Interaural plane +12 mm | Download | |
| C2 | Ischemia | Interaural plane +11 mm | Download | |
| CALB2 | Control | Interaural plane +30 mm | Download | |
| CALB2 | Ischemia | Interaural plane +15 mm | Download | |
| CD38 | Control | Interaural plane +30 mm | Download | |
| CD38 | Ischemia | Interaural plane +15 mm | Download | |
| CD83 | Control | Interaural plane +30 mm | Download | |
| CD83 | Ischemia | Interaural plane +15 mm | Download | |
| CDH13 | Control | Interaural plane +12 mm | Download | |
| CDH13 | Ischemia | Interaural plane +20 mm | Download | |
| CHN2 | Control | Interaural plane +30 mm | Download | |
| CHN2 | Ischemia | Interaural plane +15 mm | Download | |
| CLU | Control | Interaural plane +30 mm | Download | |
| CLU | Ischemia | Interaural plane +15 mm | Download | |
| CNTN1 | Control | Interaural plane +12 mm | Download | |
| CNTN1 | Ischemia | Interaural plane +11 mm | Download | |
| CORO1B | Control | Interaural plane +30 mm | Download | |
| CORO1B | Ischemia | Interaural plane +15 mm | Download | |
| CPNE2 | Control | Interaural plane +12 mm | Download | |
| CPNE2 | Ischemia | Interaural plane +11 mm | Download | |
| CRYBB2 | Control | Interaural plane +30 mm | Download | |
| CRYBB2 | Ischemia | Interaural plane +15 mm | Download | |
| CUX1 | Control | Interaural plane +12 mm | Download | |
| CUX1 | Ischemia | Interaural plane +11 mm | Download | |
| CXXC5 | Control | Interaural plane +30 mm | Download | |
| CXXC5 | Ischemia | Interaural plane +15 mm | Download | |
| DCX | Control | Interaural plane +12 mm | Download | |
| DCX | Ischemia | Interaural plane +11 mm | Download | |
| DDR1 | Control | Interaural plane +12 mm | Download | |
| DDR1 | Ischemia | Interaural plane +11 mm | Download | |
| DEC2 | Control | Interaural plane +29 mm | Download | |
| DEC2 | Ischemia | Interaural plane +15 mm | Download | |
| DIP2A | Control | Interaural plane +30 mm | Download | |
| DIP2A | Ischemia | Interaural plane +15 mm | Download | |
| DLX2 | Control | Interaural plane +12 mm | Download | |
| DLX2 | Ischemia | Interaural plane +11 mm | Download | |
| DOCK1 | Control | Interaural plane +30 mm | Download | |
| DOCK1 | Ischemia | Interaural plane +15 mm | Download | |
| EFNB1 | Control | Interaural plane +12 mm | Download | |
| EFNB1 | Ischemia | Interaural plane +11 mm | Download | |
| ELAVL3 | Control | Interaural plane +30 mm | Download | |
| ELAVL3 | Ischemia | Interaural plane +15 mm | Download | |
| ELAVL4 | Control | Interaural plane +12 mm | Download | |
| ELAVL4 | Ischemia | Interaural plane +11 mm | Download | |
| ELMO1 | Control | Interaural plane +12 mm | Download | |
| ELMO1 | Ischemia | Interaural plane +11 mm | Download | |
| EMX2 | Control | Interaural plane +12 mm | Download | |
| EMX2 | Ischemia | Interaural plane +11 mm | Download | |
| ERBB2 | Control | Interaural plane +12 mm | Download | |
| ERBB2 | Ischemia | Interaural plane +11 mm | Download | |
| ERBB4 | Control | Interaural plane +12 mm | Download | |
| ERBB4 | Ischemia | Interaural plane +11 mm | Download | |
| ETV3 | Control | Interaural plane +12 mm | Download | |
| ETV3 | Ischemia | Interaural plane +11 mm | Download | |
| FAM107A | Control | Interaural plane +30 mm | Download | |
| FAM107A | Ischemia | Interaural plane +15 mm | Download | |
| FEZ1 | Control | Interaural plane +29 mm | Download | |
| FEZ1 | Ischemia | Interaural plane +15 mm | Download | |
| FITM2 | Control | Interaural plane +12 mm | Download | |
| FITM2 | Ischemia | Interaural plane +11 mm | Download | |
| FLCN | Control | Interaural plane +32 mm | Download | |
| FLCN | Ischemia | Interaural plane +15 mm | Download | |
| FLNC | Control | Interaural plane +12 mm | Download | |
| FLNC | Ischemia | Interaural plane +11 mm | Download | |
| FOXRED2 | Control | Interaural plane +12 mm | Download | |
| FOXRED2 | Ischemia | Interaural plane +11 mm | Download | |
| FTO | Control | Interaural plane +29 mm | Download | |
| FTO | Ischemia | Interaural plane +15 mm | Download | |
| GALC | Control | Interaural plane +12 mm | Download | |
| GALC | Ischemia | Interaural plane +11 mm | Download | |
| GFAP | Control | Interaural plane +29 mm | Download | |
| GFAP | Ischemia | Interaural plane +15 mm | Download | |
| GJA1 | Control | Interaural plane +29 mm | Download | |
| GJA1 | Ischemia | Interaural plane +15 mm | Download | |
| GLI1 | Control | Interaural plane +29 mm | Download | |
| GLI1 | Ischemia | Interaural plane +15 mm | Download | |
| GNAO1 | Control | Interaural plane +29 mm | Download | |
| GNAO1 | Ischemia | Interaural plane +15 mm | Download | |
| GPM6B | Control | Interaural plane +29 mm | Download | |
| GPM6B | Ischemia | Interaural plane +15 mm | Download | |
| GPR17 | Control | Interaural plane +29 mm | Download | |
| GPR17 | Ischemia | Interaural plane +15 mm | Download | |
| GPR37L1 | Control | Interaural plane +12 mm | Download | |
| GPR37L1 | Ischemia | Interaural plane +11 mm | Download | |
| GPRC5B | Control | Interaural plane +12 mm | Download | |
| GPRC5B | Ischemia | Interaural plane +11 mm | Download | |
| GPSM1 | Control | Interaural plane +12 mm | Download | |
| GPSM1 | Ischemia | Interaural plane +11 mm | Download | |
| GREB1 | Control | Interaural plane +12 mm | Download | |
| GREB1 | Ischemia | Interaural plane +11 mm | Download | |
| GSTCD | Control | Interaural plane +12 mm | Download | |
| GSTCD | Ischemia | Interaural plane +11 mm | Download | |
| HGF | Control | Interaural plane +29 mm | Download | |
| HGF | Ischemia | Interaural plane +15 mm | Download | |
| HNMT | Control | Interaural plane +12 mm | Download | |
| HNMT | Ischemia | Interaural plane +11 mm | Download | |
| ICAM1 | Control | Interaural plane +12 mm | Download | |
| ICAM1 | Ischemia | Interaural plane +11 mm | Download | |
| IFNGR1 | Control | Interaural plane +12 mm | Download | |
| IFNGR1 | Ischemia | Interaural plane +11 mm | Download | |
| IGFBP5 | Control | Interaural plane +12 mm | Download | |
| IGFBP5 | Ischemia | Interaural plane +11 mm | Download | |
| IL6ST | Control | Interaural plane +12 mm | Download | |
| IL6ST | Ischemia | Interaural plane +11 mm | Download | |
| ITGB8 | Control | Interaural plane +29 mm | Download | |
| ITGB8 | Ischemia | Interaural plane +15 mm | Download | |
| JAKMIP3 | Control | Interaural plane +12 mm | Download | |
| JAKMIP3 | Ischemia | Interaural plane +11 mm | Download | |
| KCNJ10 | Control | Interaural plane +12 mm | Download | |
| KCNJ10 | Ischemia | Interaural plane +11 mm | Download | |
| KIF2A | Control | Interaural plane +29 mm | Download | |
| KIF2A | Ischemia | Interaural plane +15 mm | Download | |
| LDLRAD3 | Control | Interaural plane +12 mm | Download | |
| LDLRAD3 | Ischemia | Interaural plane +11 mm | Download | |
| LFNG | Control | Interaural plane +12 mm | Download | |
| LFNG | Ischemia | Interaural plane +11 mm | Download | |
| LGR5 | Control | Interaural plane +12 mm | Download | |
| LGR5 | Ischemia | Interaural plane +11 mm | Download | |
| LIX1 | Control | Interaural plane +12 mm | Download | |
| LIX1 | Ischemia | Interaural plane +11 mm | Download | |
| LRIG1 | Control | Interaural plane +29 mm | Download | |
| LRIG1 | Ischemia | Interaural plane +15 mm | Download | |
| LRIG2 | Control | Interaural plane +29 mm | Download | |
| LRIG2 | Ischemia | Interaural plane +15 mm | Download | |
| LRIG3 | Control | Interaural plane +29 mm | Download | |
| LRIG3 | Ischemia | Interaural plane +15 mm | Download | |
| LRRC4B(LRIG4) | Control | Interaural plane +29 mm | Download | |
| LRRC4B(LRIG4) | Ischemia | Interaural plane +15 mm | Download | |
| LRRC8C | Control | Interaural plane +29 mm | Download | |
| LRRC8C | Ischemia | Interaural plane +15 mm | Download | |
| MAML2 | Control | Interaural plane +29 mm | Download | |
| MAML2 | Ischemia | Interaural plane +15 mm | Download | |
| MAPRE2 | Control | Interaural plane +29 mm | Download | |
| MAPRE2 | Ischemia | Interaural plane +15 mm | Download | |
| MAX | Control | Interaural plane +29 mm | Download | |
| MAX | Ischemia | Interaural plane +15 mm | Download | |
| MCM6 | Control | Interaural plane +27 mm | Download | |
| MCM6 | Ischemia | Interaural plane +15 mm | Download | |
| MET | Control | Interaural plane +29 mm | Download | |
| MET | Ischemia | Interaural plane +15 mm | Download | |
| MLC1 | Control | Interaural plane +29 mm | Download | |
| MLC1 | Ischemia | Interaural plane +15 mm | Download | |
| MVB12B | Control | Interaural plane +12 mm | Download | |
| MVB12B | Ischemia | Interaural plane +11 mm | Download | |
| NACC2 | Control | Interaural plane +29 mm | Download | |
| NACC2 | Ischemia | Interaural plane +15 mm | Download | |
| NAV1 | Control | Interaural plane +12 mm | Download | |
| NAV1 | Ischemia | Interaural plane +11 mm | Download | |
| NCAM1 | Control | Interaural plane +29 mm | Download | |
| NCAM1 | Ischemia | Interaural plane +15 mm | Download | |
| NCAN | Control | Interaural plane +12 mm | Download | |
| NCAN | Ischemia | Interaural plane +11 mm | Download | |
| NDST1 | Control | Interaural plane +29 mm | Download | |
| NDST1 | Ischemia | Interaural plane +15 mm | Download | |
| NEK4 | Control | Interaural plane +12 mm | Download | |
| NEK4 | Ischemia | Interaural plane +11 mm | Download | |
| NEO1 | Control | Interaural plane +29 mm | Download | |
| NEO1 | Ischemia | Interaural plane +15 mm | Download | |
| NESTIN | Control | Interaural plane +29 mm | Download | |
| NESTIN | Ischemia | Interaural plane +15 mm | Download | |
| NEUROG2 | Control | Interaural plane +12 mm | Download | |
| NEUROG2 | Ischemia | Interaural plane +11 mm | Download | |
| NFASC | Control | Interaural plane +12 mm | Download | |
| NFASC | Ischemia | Interaural plane +11 mm | Download | |
| NLGN3 | Control | Interaural plane +29 mm | Download | |
| NLGN3 | Ischemia | Interaural plane +15 mm | Download | |
| NLGN3 | Ischemia | Interaural plane +15 mm | Download | |
| NOTCH1 | Control | Interaural plane +29 mm | Download | |
| NOTCH1 | Ischemia | Interaural plane +15 mm | Download | |
| NR2E1 | Control | Interaural plane +12 mm | Download | |
| NR2E1 | Ischemia | Interaural plane +11 mm | Download | |
| NRBP2 | Control | Interaural plane +29 mm | Download | |
| NRBP2 | Ischemia | Interaural plane +15 mm | Download | |
| ODF2 | Control | Interaural plane +29 mm | Download | |
| ODF2 | Ischemia | Interaural plane +15 mm | Download | |
| OLIG2 | Control | Interaural plane +12 mm | Download | |
| OLIG2 | Ischemia | Interaural plane +11 mm | Download | |
| OTOF | Control | Interaural plane +12 mm | Download | |
| OTOF | Ischemia | Interaural plane +11 mm | Download | |
| PAX6 | Control | Interaural plane +29 mm | Download | |
| PAX6 | Ischemia | Interaural plane +15 mm | Download | |
| PCYT1B | Control | Interaural plane +31 mm | Download | |
| PCYT1B | Ischemia | Interaural plane +15 mm | Download | |
| Per3 | Control | Interaural plane +29 mm | Download | |
| Per3 | Ischemia | Interaural plane +15 mm | Download | |
| PFKFB2 | Control | Interaural plane +29 mm | Download | |
| PFKFB2 | Ischemia | Interaural plane +15 mm | Download | |
| PHACTR4 | Control | Interaural plane +29 mm | Download | |
| PHACTR4 | Ischemia | Interaural plane +15 mm | Download | |
| PHKG1 | Control | Interaural plane +29 mm | Download | |
| PHKG1 | Ischemia | Interaural plane +15 mm | Download | |
| PMP2 | Control | Interaural plane +15 mm | Download | |
| PMP2 | Ischemia | Interaural plane +29 mm | Download | |
| POLR2A | Control | Interaural plane +29 mm | Download | |
| POLR2A | Ischemia | Interaural plane +15 mm | Download | |
| POU3F3 | Control | Interaural plane +12 mm | Download | |
| POU3F3 | Ischemia | Interaural plane +11 mm | Download | |
| PPAP2B | Control | Interaural plane +12 mm | Download | |
| PPAP2B | Ischemia | Interaural plane +11 mm | Download | |
| PPL | Control | Interaural plane +12 mm | Download | |
| PPL | Ischemia | Interaural plane +11 mm | Download | |
| PPM1K | Control | Interaural plane +29 mm | Download | |
| PPM1K | Ischemia | Interaural plane +15 mm | Download | |
| PROM1 (CD133) | Control | Interaural plane +29 mm | Download | |
| PROM1 (CD133) | Ischemia | Interaural plane +15 mm | Download | |
| PROX1 | Control | Interaural plane +29 mm | Download | |
| PROX1 | Ischemia | Interaural plane +15 mm | Download | |
| PTPLB | Control | Interaural plane +29 mm | Download | |
| PTPLB | Ischemia | Interaural plane +15 mm | Download | |
| RBM34 | Control | Interaural plane +29 mm | Download | |
| RBM34 | Ischemia | Interaural plane +15 mm | Download | |
| RBPJ | Control | Interaural plane +29 mm | Download | |
| RBPJ | Ischemia | Interaural plane +15 mm | Download | |
| RXFP3 | Control | Interaural plane +29 mm | Download | |
| RXFP3 | Ischemia | Interaural plane +15 mm | Download | |
| SCD5 | Control | Interaural plane +31 mm | Download | |
| SCD5 | Ischemia | Interaural plane +15 mm | Download | |
| SEPT9 | Control | Interaural plane +27 mm | Download | |
| SEPT9 | Ischemia | Interaural plane +15 mm | Download | |
| SERPINB6 | Control | Interaural plane +27 mm | Download | |
| SERPINB6 | Ischemia | Interaural plane +15 mm | Download | |
| SLITRK1 | Control | Interaural plane +27 mm | Download | |
| SLITRK1 | Ischemia | Interaural plane +15 mm | Download | |
| SOX2 | Control | Interaural plane +27 mm | Download | |
| SOX2 | Ischemia | Interaural plane +15 mm | Download | |
| SP8 | Control | Interaural plane +12 mm | Download | |
| SP8 | Ischemia | Interaural plane +11 mm | Download | |
| SP9 | Control | Interaural plane +27 mm | Download | |
| SP9 | Ischemia | Interaural plane +15 mm | Download | |
| SPARC | Control | Interaural plane +29 mm | Download | |
| SPARC | Ischemia | Interaural plane +15 mm | Download | |
| SPATA6 | Control | Interaural plane +31 mm | Download | |
| SPATA6 | Ischemia | Interaural plane +15 mm | Download | |
| ST6GALNAC3 | Control | Interaural plane +31 mm | Download | |
| ST6GALNAC3 | Ischemia | Interaural plane +15 mm | Download | |
| TCP11L2 | Control | Interaural plane +31 mm | Download | |
| TCP11L2 | Ischemia | Interaural plane +15 mm | Download | |
| THRA | Control | Interaural plane +12 mm | Download | |
| THRA | Ischemia | Interaural plane +11 mm | Download | |
| TMEM87A | Control | Interaural plane +12 mm | Download | |
| TMEM87A | Ischemia | Interaural plane +11 mm | Download | |
| TNC | Control | Interaural plane +29 mm | Download | |
| TNC | Ischemia | Interaural plane +15 mm | Download | |
| TNR | Control | Interaural plane +29 mm | Download | |
| TNR | Ischemia | Interaural plane +15 mm | Download | |
| TUBB3 | Control | Interaural plane +29 mm | Download | |
| TUBB3 | Ischemia | Interaural plane +15 mm | Download | |
| TXNIP | Control | Interaural plane +12 mm | Download | |
| TXNIP | Ischemia | Interaural plane +11 mm | Download | |
| ULK2 | Control | Interaural plane +12 mm | Download | |
| ULK2 | Ischemia | Interaural plane +11 mm | Download | |
| VCAM1 | Control | Interaural plane +29 mm | Download | |
| VCAM1 | Ischemia | Interaural plane +15 mm | Download | |
| VEGFA | Control | Interaural plane +29 mm | Download | |
| VEGFA | Ischemia | Interaural plane +15 mm | Download | |
| Vimentin | Control | Interaural plane +29 mm | Download | |
| Vimentin | Ischemia | Interaural plane +15 mm | Download | |
| WLS | Control | Interaural plane +29 mm | Download | |
| WLS | Ischemia | Interaural plane +15 mm | Download | |
| WNT16 | Control | Interaural plane +29 mm | Download | |
| WNT16 | Ischemia | Interaural plane +15 mm | Download | |
| ZBTB16 | Control | Interaural plane +27 mm | Download | |
| ZBTB16 | Ischemia | Interaural plane +15 mm | Download | |
| ZBTB20 | Control | Interaural plane +27 mm | Download | |
| ZBTB20 | Ischemia | Interaural plane +15 mm | Download | |
| ZBTB25 | Control | Interaural plane +15 mm | Download | |
| ZBTB25 | Ischemia | Interaural plane +27 mm | Download | |
| Zeb1 | Control | Interaural plane +15 mm | Download | |
| Zeb1 | Ischemia | Interaural plane +27 mm | Download | |
| ZFP64 | Control | Interaural plane +12 mm | Download | |
| ZFP64 | Ischemia | Interaural plane +11 mm | Download | |
| ZNF704 | Control | Interaural plane +12 mm | Download | |
| ZNF704 | Ischemia | Interaural plane +11 mm | Download | |
| ZSCAN12 | Control | Interaural plane +12 mm | Download | |
| ZSCAN12 | Ischemia | Interaural plane +11 mm | Download | |